SNP Profiles matching SLC 24

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
1._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
2._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
3._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
4._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
5._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
6._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
7._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
8._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
9._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
10._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
11._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
12._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
13._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
14._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
15._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
16._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
17._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
18._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
19._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
20._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
21._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
22._SLC_24	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
23._GC-08-093-2-16	GG	AT	AC	GT	AA	CC	AG	CC	AT	GG	AA	CC	TT	GT
24._MARPER_45	-	AT	-	GT	-	-	AG	CT	-	GG	AG	CC	TT	-
25._ICS_27	GG	AT	AC	GT	AC	CC	AG	CC	AT	GG	AA	CC	TT	GT
26._MARPER_55	-	AT	-	GG	-	-	AA	CC	-	GG	AG	CC	CT	-

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
1._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
2._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
3._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
4._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
5._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
6._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
7._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
8._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
9._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
10._SLC_24	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
11._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
12._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
13._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
14._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
15._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
16._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
17._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
18._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
19._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
20._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
21._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	TT	GG	AA	TT	AG	CT	AA	AA
22._SLC_24	CC	CC	CT	TT	CG	CC	_	GG	AA	TT	AG	CT	AA	AA
23._GC-08-093-2-16	CC	CC	CT	TT	CG	CC	_	GG	AA	TT	AG	CT	AA	AA
24._MARPER_45	CC	-	TT	GT	-	CC	-	GG	AA	TT	AG	-	AA	AA
25._ICS_27	CG	CC	CT	TT	GG	CC	TT	GG	AA	TT	AG	CT	AA	AA
26._MARPER_55	CC	-	CT	GT	-	CC	-	GG	AA	TT	AG	-	AA	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
1._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
2._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
3._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
4._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
5._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
6._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
7._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
8._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
9._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
10._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
11._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
12._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
13._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
14._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
15._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
16._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
17._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
18._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
19._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
20._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
21._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
22._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
23._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
24._MARPER_45	-	CT	-	CC	AA	-	CT	GG	AA	TT	X_X	X_X	X_X	X_X
25._ICS_27	_	CT	TT	CC	AA	TT	CC	GG	AG	CT	X_X	X_X	X_X	X_X
26._MARPER_55	-	CT	-	CC	AA	-	CT	GG	AA	TT	X_X	X_X	X_X	X_X

Input profile: SLC_24

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 17

Dapeng Zhang, 2016

1._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 6

Dapeng Zhang, 2016

2._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 7

Dapeng Zhang, 2016

3._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 8

Dapeng Zhang, 2016

4._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 9

Dapeng Zhang, 2016

5._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 10

Dapeng Zhang, 2016

6._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 12

Dapeng Zhang, 2016

7._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 14

Dapeng Zhang, 2016

8._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 18

Dapeng Zhang, 2016

9._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 2 > FP

Dapeng Zhang, 2016

10._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 5 > FP

Dapeng Zhang, 2016

11._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

12._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

13._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

14._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

16._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

18._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

19._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

20._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 17

Notes: 17

21._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 18

Notes: 18

22._SLC_24

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 16

Dapeng Zhang, 2016

23._SLC_24 GC-08-093-2-16

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

24._MARPER_45

92 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

25._ICS_27

90.5 %
37 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E286 T13

Dapeng Zhang, 2016

26._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP193
6	TcSNP226	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP723	19	TcSNP872	20	TcSNP891
21	TcSNP917	22	TcSNP929	23	TcSNP953	24	TcSNP994	25	TcSNP998
26	TcSNP1060	27	TcSNP1062	28	TcSNP1075	29	TcSNP1144	30	TcSNP1165
31	TcSNP1253	32	TcSNP1270	33	TcSNP1350	34	TcSNP1414	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484	38	TcSNP1520